MirGeneDB 2.1

MirGeneDB ID

Dsi-Mir-281-P1-v1

Family name MIR-281 (all species)
Seed GUCAUGG
Species Fruit fly (Drosophila simulans)
MiRBase ID dsi-mir-281
Paralogues Dsi-Mir-281-P1-v2  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2 
Orthologues Aae-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cgi-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dpu-Mir-281  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Ebu-Mir-281  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Sko-Mir-281  Sme-Mir-281  Sto-Mir-281  Tca-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Bilateria
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)
2R: 8762476-8762542 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P1-v1)
Mir-988 2R: 8750716-8750773 [-] UCSC Ensembl
Mir-281-P1-v1 2R: 8762476-8762542 [-] UCSC Ensembl
Mir-281-P1-v2 2R: 8762477-8762541 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAUCGAAUCCAAAUGCGAAUAAGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGAAAGCAUUUAAUAUCACUGUCAUGGAAUUGCUCUCUUUGUAUAAUAUUCGACGAUGCGCUGUGAGGCAAU
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Structure
        10           20        30        40         50        60   
AGAAUCGAAUCCAAAUG---|     AG  A           UG-     C      CCAGAAAGC 
                    CGAAUA  UG AUAAAGAGAGC   UCCGU GACAGU         \
                    GCUUAU  AU UGUUUCUCUCG   AGGUA CUGUCA         A
UAACGGAGUGUCGCGUAGCA^     A-  A           UUA     -      CUAUAAUUU 
     120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
He Wh
Star sequence

Dsi-Mir-281-P1-v1_5p*

mirBase accessionMIMAT0008905
Sequence
0- AAAGAGAGCUGUCCGUCGACAGU -23
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Mature sequence

Dsi-Mir-281-P1-v1_3p

mirBase accessionMIMAT0008906
Sequence
44- UGUCAUGGAAUUGCUCUCUUUGU -67
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