MirGeneDB ID | Gpa-Mir-281-P1-v1 |
Family name |
MIR-281 (all species) |
Seed |
AAGAGAG |
Species |
Tsetse fly (Glossina pallidipes) |
MiRBase ID |
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Paralogues |
Gpa-Mir-281-P1-v2
Gpa-Mir-281-P2-v1
Gpa-Mir-281-P2-v2
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Orthologues |
Aae-Mir-281
Aga-Mir-281
Agr-Mir-281
Asu-Mir-281
Bfl-Mir-281
Bge-Mir-281
Bko-Mir-281
Bla-Mir-281
Bpl-Mir-281
Cin-Mir-281
Csc-Mir-281
Cte-Mir-281
Dan-Mir-281-P1-v1
Dan-Mir-281-P1-v2
Dgr-Mir-281
Dlo-Mir-281
Dma-Mir-281
Dme-Mir-281-P1-v1
Dme-Mir-281-P1-v2
Dmo-Mir-281-P1-v1
Dmo-Mir-281-P1-v2
Dpu-Mir-281
Dsi-Mir-281-P1-v1
Dsi-Mir-281-P1-v2
Dya-Mir-281-P1-v1
Dya-Mir-281-P1-v2
Eba-Mir-281
Ebu-Mir-281
Egr-Mir-281
Esc-Mir-281
Gsa-Mir-281
Hme-Mir-281
Hru-Mir-281
Isc-Mir-281
Lhy-Mir-281
Llo-Mir-281
Mgi-Mir-281
Mom-Mir-281
Npo-Mir-281
Obi-Mir-281
Ofu-Mir-281
Ovu-Mir-281
Pca-Mir-281
Pcr-Mir-281
Pdu-Mir-281
Pfl-Mir-281
Rph-Mir-281
Sko-Mir-281
Sma-Mir-281
Sme-Mir-281
Snu-Mir-281
Sto-Mir-281
Tca-Mir-281
Tur-Mir-281
War-Mir-281
|
Node of Origin (locus) |
Glossinidae + Drosophilidae
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Node of Origin (family) |
Nephrozoa
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Genome context (GpalI1) |
Scaffold293: 205475-205541 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUCUAUUAUAUGCCUAGCGAAUAAGUAAAUAAAGAGAGCUGUCCGUCGACAGUCCAGUUCAGACAUAUUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUGAUAUUCGAUUAUCGUCACGUAAACUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCUAUUAUAUGCCUAG---| AG A UG- C CCAGUUCAG
CGAAUA UA AUAAAGAGAGC UCCGU GACAGU \
GCUUAU GU UGUUUCUCUCG AGGUA CUGUCA A
UUUCAAAUGCACUGCUAUUA^ A- A UUA - UAAUUAUAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Gpa-Mir-281-P1-v1_5p |
mirBase accession | None |
Sequence |
0- AAAGAGAGCUGUCCGUCGACAGU -23
Get sequence
|
Co-mature sequence |
Gpa-Mir-281-P1-v1_3p |
mirBase accession | None |
Sequence |
44- UGUCAUGGAAUUGCUCUCUUUGU -67
Get sequence
|