Mir-281-P1-v1

MirGeneDB ID

Dmo-Mir-281-P1-v1

Family name

MIR-281 (all species)

Seed

GUCAUGG

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-281-1

Paralogues

Dmo-Mir-281-P1-v2 Dmo-Mir-281-P2-v1 Dmo-Mir-281-P2-v2

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cin-Mir-281 Csc-Mir-281 Cte-Mir-281 Dan-Mir-281-P1-v1 Dan-Mir-281-P1-v2 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dme-Mir-281-P1-v1 Dme-Mir-281-P1-v2 Dpu-Mir-281 Dsi-Mir-281-P1-v1 Dsi-Mir-281-P1-v2 Dya-Mir-281-P1-v1 Dya-Mir-281-P1-v2 Eba-Mir-281 Ebu-Mir-281 Egr-Mir-281 Esc-Mir-281 Gpa-Mir-281-P1-v1 Gpa-Mir-281-P1-v2 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lhy-Mir-281 Llo-Mir-281 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Drosophila

Node of Origin (family)

Nephrozoa

Genome context
(Dmoj_caf1)

scaffold_6496: 6376244-6376308 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-281-P1-v1)

Mir-281-P2-v1 scaffold_6496: 6376080-6376147 [-] Ensembl
Mir-281-P2-v2 scaffold_6496: 6376080-6376147 [-] Ensembl
Mir-281-P1-v1 scaffold_6496: 6376244-6376308 [-] Ensembl
Mir-281-P1-v2 scaffold_6496: 6376245-6376307 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAUCGUAGCGAAAAUGCGAAUAAGUGAAUAAAGAGAGCUGUCCGUCGACAGUCCAGUAAAGAUUGUAAAACUGUCAUGGAAUUGCUCUCUUUGUAUGAUAUUCGACGUUGCCCAAACUAACCCC

Get precursor sequence

Structure

        10           20        30        40         50        60  
AAAUCGUAGCGAAAAUG---|     AGUGA           UG-     C      CCAGUAAA 
                    CGAAUA     AUAAAGAGAGC   UCCGU GACAGU        \
                    GCUUAU     UGUUUCUCUCG   AGGUA CUGUCA        G
CCCCAAUCAAACCCGUUGCA^     AGUA-           UUA     -      AAAUGUUA 
   120       110       100         90        80         70