MirGeneDB 2.1

MirGeneDB ID

Cin-Mir-281

Family name MIR-281 (all species)
Seed GUCAUGG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-281
Paralogues
Orthologues Aae-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cbr-Mir-281-P3  Cbr-Mir-281-P4  Cel-Mir-281-P3  Cel-Mir-281-P4  Cgi-Mir-281  Cmi-Mir-281-v1  Cmi-Mir-281-v2  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2  Dan-Mir-281-P2-v1  Dan-Mir-281-P2-v2  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dme-Mir-281-P2-v1  Dme-Mir-281-P2-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P1-v2  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Ebu-Mir-281  Efe-Mir-281-P5  Efe-Mir-281-P6  Efe-Mir-281-P7  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Lan-Mir-281-P9  Lan-Mir-281-P10  Lgi-Mir-281-P8  Lgi-Mir-281-P9  Lpo-Mir-281-P13  Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P16  Lpo-Mir-281-P17  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Pma-Mir-281-P11  Pma-Mir-281-P12  Sko-Mir-281  Sme-Mir-281  Sto-Mir-281  Tca-Mir-281 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ci3)
HT000062.1: 205034-205088 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAAAAUAUAUAACUGUCCAGUGCGUGUCGGAGAGUAAUUUCAUGUUAGUGACAUCACUACUGUCAUGGAGUUGCUCUCUUAUUAGCGCUGAGGCCAAACAGCACCUACCGAC
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Structure
        10         20         30        40        50       
UUGAAAAAUAUAUAACU-   -|     GUGUC                U    GACA 
                  GUC CAGUGC     GGAGAGUAAUUUCAUG UAGU    \
                  CGG GUCGCG     UCUCUCGUUGAGGUAC GUCA    U
CAGCCAUCCACGACAAAC   A^     AUUAU                U    UCAC 
   110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-281_5p* (predicted)

mirBase accessionMIMAT0015265
Sequence
0- CGGAGAGUAAUUUCAUGUUAGU -22
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Mature sequence

Cin-Mir-281_3p

mirBase accessionMIMAT0006114
Sequence
33- UGUCAUGGAGUUGCUCUCUUAU -55
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