Mir-281

MirGeneDB ID

Cin-Mir-281

Family name

MIR-281 (all species)

Seed

GUCAUGG

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-281

Paralogues

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Ava-Mir-281-P24a Ava-Mir-281-P24b Ava-Mir-281-P25a Ava-Mir-281-P25b Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cbr-Mir-281-P3 Cbr-Mir-281-P4 Cel-Mir-281-P3 Cel-Mir-281-P4 Cmi-Mir-281-v1 Cmi-Mir-281-v2 Csc-Mir-281 Cte-Mir-281 Dan-Mir-281-P1-v1 Dan-Mir-281-P1-v2 Dan-Mir-281-P2 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dme-Mir-281-P1-v1 Dme-Mir-281-P1-v2 Dme-Mir-281-P2-v1 Dme-Mir-281-P2-v2 Dmo-Mir-281-P1-v1 Dmo-Mir-281-P1-v2 Dmo-Mir-281-P2-v1 Dmo-Mir-281-P2-v2 Dpu-Mir-281 Dsi-Mir-281-P1-v1 Dsi-Mir-281-P1-v2 Dsi-Mir-281-P2-v1 Dsi-Mir-281-P2-v2 Dya-Mir-281-P1-v1 Dya-Mir-281-P1-v2 Dya-Mir-281-P2-v1 Dya-Mir-281-P2-v2 Eba-Mir-281 Ebu-Mir-281 Efe-Mir-281-P5 Efe-Mir-281-P6 Efe-Mir-281-P7 Egr-Mir-281 Esc-Mir-281 Gpa-Mir-281-P1-v1 Gpa-Mir-281-P1-v2 Gpa-Mir-281-P2-v1 Gpa-Mir-281-P2-v2 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lan-Mir-281-P10 Lan-Mir-281-P11 Lgi-Mir-281-P8 Lgi-Mir-281-P9 Lhy-Mir-281 Llo-Mir-281 Lpo-Mir-281-P14 Lpo-Mir-281-P15 Lpo-Mir-281-P16 Lpo-Mir-281-P17 Lpo-Mir-281-P18 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pau-Mir-281-P22 Pau-Mir-281-P23 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Pma-Mir-281-P12 Pma-Mir-281-P13 Pve-Mir-281-P19 Pve-Mir-281-P20 Pve-Mir-281-P21a Pve-Mir-281-P21b Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(ci3)

HT000062.1: 205034-205088 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGAAAAAUAUAUAACUGUCCAGUGCGUGUCGGAGAGUAAUUUCAUGUUAGUGACAUCACUACUGUCAUGGAGUUGCUCUCUUAUUAGCGCUGAGGCCAAACAGCACCUACCGAC

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Structure

        10         20         30        40        50       
UUGAAAAAUAUAUAACU-   -|     GUGUC                U    GACA 
                  GUC CAGUGC     GGAGAGUAAUUUCAUG UAGU    \
                  CGG GUCGCG     UCUCUCGUUGAGGUAC GUCA    U
CAGCCAUCCACGACAAAC   A^     AUUAU                U    UCAC 
   110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Star sequence

Cin-Mir-281_5p* (predicted)

mirBase accession

MIMAT0015265

Sequence

0- CGGAGAGUAAUUUCAUGUUAGU -22

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Mature sequence

Cin-Mir-281_3p

mirBase accession

MIMAT0006114

Sequence

33- UGUCAUGGAGUUGCUCUCUUAU -55

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