MirGeneDB 3.0
MirGeneDB ID

Pve-Mir-281-P20

Family name MIR-281 (all species)
Seed GUCAUGG
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues Pve-Mir-281-P19  Pve-Mir-281-P21a  Pve-Mir-281-P21b 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dpu-Mir-281  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Dentaliidae
Node of Origin (family) Nephrozoa
Genome context
(PVE_manual_microRNAloci)		 CM062289.1:249386302-249386560: 101-159 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCACCCCUAAAAAAGGGAUCUCGCAAUAAAGGGAGCACCCGUCGACAGUCGGAUAAAAAAAGCACUGUCAUGGAGUUGCUCUCUUCAUGGUGGAGGUCAAACGUCUUCAGUGUUUCA
Get precursor sequence
Structure
        10         20         30         40         50        
UAUCACCCCUAAAAAAGG-     -   A  A        -  -|   C      CGGAUA 
                   GAUCU CGC AU AAGGGAGC AC CCGU GACAGU      A
                   CUGGA GUG UA UUCUCUCG UG GGUA CUGUCA      A
ACUUUGUGACUUCUGCAAA     G   G  C        U  A^   -      CGAAAA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Pve-Mir-281-P20_5p*
mirBase accessionNone
Sequence 
0- AAGGGAGCACCCGUCGACAGU -21
Get sequence
Mature sequence

Pve-Mir-281-P20_3p
mirBase accessionNone
Sequence 
37- UGUCAUGGAGUUGCUCUCUUCA -59
Get sequence