MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-281-P2-v1

Family name MIR-281 (all species)
Seed AGAGAGC
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-281-2
Paralogues Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dme-Mir-281-P2-v2 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P2  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gpa-Mir-281-P2-v1  Gpa-Mir-281-P2-v2  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Nephrozoa
Genome context
(Drosophila_melanogaster_BDGP6)		 2R: 12170164-12170230 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P2-v1)		 Mir-988 2R: 12158888-12158945 [-] UCSC Ensembl
Mir-281-P2-v1 2R: 12170164-12170230 [-] UCSC Ensembl
Mir-281-P2-v2 2R: 12170164-12170230 [-] UCSC Ensembl
Mir-281-P1-v1 2R: 12170383-12170449 [-] UCSC Ensembl
Mir-281-P1-v2 2R: 12170384-12170448 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUUCAGAUCCUCCGCGAAUUGUGAAAUGAAGAGAGCUAUCCGUCGACAGUCAAGUUAAGACCGAUUGUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUAACAUUCGAAAGGCGACGAUUAUAAGA
Get precursor sequence
Structure
        10           20        30        40         50        60   
GCUUUCAGAUCCUCCGC---|   U  GAA UG        UA-     C      CAAGUUAAGA 
                    GAAU GU   A  AAGAGAGC   UCCGU GACAGU          \
                    CUUA CA   U  UUCUCUCG   AGGUA CUGUCA          C
AGAAUAUUAGCAGCGGAAAG^   -  AUA GU        UUA     -      UAAUGUUAGC 
     120       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo He He La Ov Sa Wh
Mature sequence

Dme-Mir-281-P2-v1_5p
mirBase accessionMIMAT0000349
Sequence 
0- AAGAGAGCUAUCCGUCGACAGU -22
Get sequence
Proposed targets microrna.org: MIMAT0000349
Co-mature sequence

Dme-Mir-281-P2-v1_3p
mirBase accessionMIMAT0000345
Sequence 
45- UGUCAUGGAAUUGCUCUCUUUG -67
Get sequence
Proposed targets microrna.org: MIMAT0000345