MirGeneDB 3.0

MirGeneDB ID

Dan-Mir-281-P2

Family name MIR-281 (all species)
Seed AGAGAGC
Species Fruit fly (Drosophila ananassae)
MiRBase ID dan-mir-281-2
Paralogues Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dme-Mir-281-P2-v1  Dme-Mir-281-P2-v2  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gpa-Mir-281-P2-v1  Gpa-Mir-281-P2-v2  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) Drosophila
Node of Origin (family) Nephrozoa
Genome context
(Dana_caf1)
scaffold_13266: 2568952-2569020 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-281-P2)
Mir-281-P1-v1 scaffold_13266: 2568766-2568828 [+] Ensembl
Mir-281-P1-v2 scaffold_13266: 2568767-2568827 [+] Ensembl
Mir-281-P2 scaffold_13266: 2568952-2569020 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCAAGGAUACUCCACGAAUAGUGAAAUGAAGAGAGCUAUCCGUCGACAGUCAAGUUAAAACACGGAUUGUAAUACUGUCAUGGAAUUGCUCUCUUUGUAUAACAUUCGAAAGGCGACGAUAUCGGUG
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Structure
        10           20        30        40         50        60    
CCGCAAGGAUACUCCAC---|   A  GAA UG        UA-     C      CAAGUUAAAAC 
                    GAAU GU   A  AAGAGAGC   UCCGU GACAGU           \
                    CUUA CA   U  UUCUCUCG   AGGUA CUGUCA           A
GUGGCUAUAGCAGCGGAAAG^   -  AUA GU        UUA     -      UAAUGUUAGGC 
       120       110        100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe
Mature sequence

Dan-Mir-281-P2_5p

mirBase accessionMIMAT0009182
Sequence
0- AAGAGAGCUAUCCGUCGACAGUC -23
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Star sequence

Dan-Mir-281-P2_3p*

mirBase accessionMIMAT0008429
Sequence
46- CUGUCAUGGAAUUGCUCUCUUUG -69
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