Mir-281-P18

MirGeneDB ID

Lpo-Mir-281-P18

Family name

MIR-281 (all species)

Seed

AGAGAGC

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-281-P14 Lpo-Mir-281-P15 Lpo-Mir-281-P16 Lpo-Mir-281-P17

Orthologues

Aae-Mir-281 Aga-Mir-281 Agr-Mir-281 Asu-Mir-281 Bfl-Mir-281 Bge-Mir-281 Bko-Mir-281 Bla-Mir-281 Bpl-Mir-281 Cin-Mir-281 Csc-Mir-281 Cte-Mir-281 Dgr-Mir-281 Dlo-Mir-281 Dma-Mir-281 Dpu-Mir-281 Eba-Mir-281 Ebu-Mir-281 Egr-Mir-281 Esc-Mir-281 Gsa-Mir-281 Hme-Mir-281 Hru-Mir-281 Isc-Mir-281 Lhy-Mir-281 Llo-Mir-281 Mgi-Mir-281 Mom-Mir-281 Npo-Mir-281 Obi-Mir-281 Ofu-Mir-281 Ovu-Mir-281 Pca-Mir-281 Pcr-Mir-281 Pdu-Mir-281 Pfl-Mir-281 Rph-Mir-281 Sko-Mir-281 Sma-Mir-281 Sme-Mir-281 Snu-Mir-281 Sto-Mir-281 Tca-Mir-281 Tur-Mir-281 War-Mir-281

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666563.1: 344177-344234 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UACGGCAAGUAAAAAGAAGUGUCGCUGUCAAAGAGAGCUCAUCAUGAACAGUGUGAACAUACCAACUGUCAUGGAGCUGCUCUCUUUAUGGAAACACUCGAUUACGGCAGUUUGUCUA

Get precursor sequence

Structure

        10           20        30        40         50        
UACGGCAAGUAAAAAGA---|    CG    C         UCA-      A    GUGAA 
                    AGUGU  CUGU AAAGAGAGC    UCAUGA CAGU     C
                    UCACA  GGUA UUUCUCUCG    GGUACU GUCA     A
AUCUGUUUGACGGCAUUAGC^    AA    -         UCGA      -    ACCAU 
      110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-281-P18_5p

mirBase accession

None

Sequence

0- AAGAGAGCUCAUCAUGAACAGU -22

Get sequence

Star sequence

Lpo-Mir-281-P18_3p*

mirBase accession

None

Sequence

36- UGUCAUGGAGCUGCUCUCUUUA -58

Get sequence