MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-281-P16

Family name MIR-281 (all species)
Seed AGAGAGC
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P17  Lpo-Mir-281-P18 
Orthologues Aae-Mir-281  Aga-Mir-281  Agr-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bko-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cin-Mir-281  Csc-Mir-281  Cte-Mir-281  Dgr-Mir-281  Dlo-Mir-281  Dma-Mir-281  Dpu-Mir-281  Eba-Mir-281  Ebu-Mir-281  Egr-Mir-281  Esc-Mir-281  Gsa-Mir-281  Hme-Mir-281  Hru-Mir-281  Isc-Mir-281  Lhy-Mir-281  Llo-Mir-281  Mgi-Mir-281  Mom-Mir-281  Npo-Mir-281  Obi-Mir-281  Ofu-Mir-281  Ovu-Mir-281  Pca-Mir-281  Pcr-Mir-281  Pdu-Mir-281  Pfl-Mir-281  Rph-Mir-281  Sko-Mir-281  Sma-Mir-281  Sme-Mir-281  Snu-Mir-281  Sto-Mir-281  Tca-Mir-281  Tur-Mir-281  War-Mir-281 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Nephrozoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013674012.1: 29066-29122 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAACACAACUAAGAGAGUCCGACCACGAAGAGAGCUCUUUCAAGACAGUGUGUUGUCUAAACUGUCAUGGAACUGCUCUCUUUAUGGAGGCACUCAUUAGUUACAGAAGAUAAC
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Structure
        10          20         30        40        50        
GAAGAACACAACUAAGA--    -| GA   CG        UC     A      GUGUU 
                   GAGU CC  CCA  AAGAGAGC  UUUCA GACAGU     \
                   CUCA GG  GGU  UUCUCUCG  AAGGU CUGUCA     G
CAAUAGAAGACAUUGAUUA    C^ A-   AU        UC     A      AAUCU 
     110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-281-P16_5p
mirBase accessionNone
Sequence 
0- AAGAGAGCUCUUUCAAGACAGU -22
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Star sequence

Lpo-Mir-281-P16_3p* (predicted)
mirBase accessionNone
Sequence 
35- UGUCAUGGAACUGCUCUCUUUA -57
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