MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-30-P1o3a

Family name MIR-30 (all species)
Seed GUAAACA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-30e
Paralogues Pma-Mir-30-P1o2  Pma-Mir-30-P1o3b  Pma-Mir-30-P1o4  Pma-Mir-30-P1o5  Pma-Mir-30-P2o3  Pma-Mir-30-P2o4  Pma-Mir-30-P2o5 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046095.1: 8723764-8723824 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1o3a)		 Mir-30-P1o3a NC_046095.1: 8723764-8723824 [+] UCSC Ensembl
Mir-30-P1o3b NC_046095.1: 8724552-8724613 [+] UCSC Ensembl
Mir-30-P2o3 NC_046095.1: 8724827-8724889 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUCCCAUUUUUGGUAGUGCGAGGGUGAUGUAAACAUCUCAACUGGAAGCUGUGACGUCAGUAAAGGCUUUCAGUUAGGUGUUCACGUCAGCACGCUACCCAGCUGCAGCCACUGCCGC
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Structure
        10               20        30        40        50        60
AAGCUCCCAUUUUUGGUA-------|   GAGGG      A       C           GUGACG 
                         GUGC     UGAUGU AACAUCU AACUGGAAGCU      U
                         CACG     ACUGCA UUGUGGA UUGACUUUCGG      C
CGCCGUCACCGACGUCGACCCAUCG^   -----      C       -           AAAUGA 
 .       110       100             90        80         70
Deep sequencing
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CommentThere is a single indel between the assembled genome and the miRBase entry.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-30-P1o3a_5p
mirBase accessionMIMAT0019428
Sequence 
0- UGUAAACAUCUCAACUGGAAGCU -23
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Star sequence

Pma-Mir-30-P1o3a_3p*
mirBase accessionMIMAT0019429
Sequence 
39- CUUUCAGUUAGGUGUUCACGUC -61
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