Mir-30-P1o4

MirGeneDB ID

Pma-Mir-30-P1o4

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-30c

Paralogues

Pma-Mir-30-P1o2 Pma-Mir-30-P1o3a Pma-Mir-30-P1o3b Pma-Mir-30-P1o5 Pma-Mir-30-P2o3 Pma-Mir-30-P2o4 Pma-Mir-30-P2o5

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046080.1: 2710055-2710122 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1o4)

Mir-30-P2o4 NC_046080.1: 2700975-2701036 [-] UCSC Ensembl
Mir-30-P1o4 NC_046080.1: 2710055-2710122 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCCAGCUUGCCUUGGCGGGGCGAGCAACUGUAAACAUCCUCGACUGAAAGCUGUGCUCCGCUGCUGUGAAAGGGCUUUCAGUCAGAUGUUUGCGUUUGCCGCGUGUCAAAUCGUCUCAUCGGUGAC

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Structure

        10              20        30        40        50        60    
UGCCCAGCUUGCCUUGG------| G       AACU         CUC           GUGCUCCGC 
                       CG GGCGAGC    GUAAACAUC   GACUGAAAGCU         U
                       GC CCGUUUG    CGUUUGUAG   CUGACUUUCGG         G
CAGUGGCUACUCUGCUAAACUGU^ G       ----         A--           GAAAGUGUC 
      120       110       100            90          80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-30-P1o4_5p

mirBase accession

MIMAT0019425

Sequence

0- UGUAAACAUCCUCGACUGAAAGCU -24

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Star sequence

Pma-Mir-30-P1o4_3p* (predicted)

mirBase accession

MIMAT0019426

Sequence

46- CUUUCAGUCAGAUGUUUGCGUU -68

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