Mir-30-P2o3

MirGeneDB ID

Pma-Mir-30-P2o3

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-30g

Paralogues

Pma-Mir-30-P1o2 Pma-Mir-30-P1o3a Pma-Mir-30-P1o3b Pma-Mir-30-P1o4 Pma-Mir-30-P1o5 Pma-Mir-30-P2o4 Pma-Mir-30-P2o5

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046095.1: 8724827-8724889 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2o3)

Mir-30-P1o3a NC_046095.1: 8723764-8723824 [+] UCSC Ensembl
Mir-30-P1o3b NC_046095.1: 8724552-8724613 [+] UCSC Ensembl
Mir-30-P2o3 NC_046095.1: 8724827-8724889 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGUGCGAAGACAUCCCGAGUUUCAGGUGGUGUAAACAUCCUUCACUCUCAGCUGUGAGAUGGAAGCACACUGAGAGGAGGGGUGUUGACACCAGCUGACUCGGACAUACCUCCUCCGAUCCC

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Structure

        10            20        30        40        50        60 
ACGUGCGAAGACAUCCC----|  UU    G      A          A       CUGUGAGA 
                     GAG  UCAG UGGUGU AACAUCCUUC CUCUCAG        U
                     CUC  AGUC ACCACA UUGUGGGGAG GAGAGUC        G
CCCUAGCCUCCUCCAUACAGG^  --    G      G          -       ACACGAAG 
 120       110       100          90        80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-30-P2o3_5p

mirBase accession

MIMAT0019431

Sequence

0- UGUAAACAUCCUUCACUCUCAGCU -24

Get sequence

Star sequence

Pma-Mir-30-P2o3_3p* (predicted)

mirBase accession

None

Sequence

40- CUGAGAGGAGGGGUGUUGACACC -63

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