MirGeneDB ID | Sha-Novel-10-P3 |
Family name |
SHA-NOVEL-10 (all species) |
Seed |
GAGGUUU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
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Paralogues |
Sha-Novel-10-P1a-v1
Sha-Novel-10-P1a-v2
Sha-Novel-10-P1b-v1
Sha-Novel-10-P1b-v2
Sha-Novel-10-P2a-v1
Sha-Novel-10-P2a-v2
Sha-Novel-10-P2b-v1
Sha-Novel-10-P2b-v2
Sha-Novel-10-P4
Sha-Novel-10-P5-v1
Sha-Novel-10-P5-v2
|
Orthologues |
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Node of Origin (locus) |
S. harrisii
|
Node of Origin (family) |
S. harrisii
|
Genome context (DEVIL_add) |
GL867904.1: 83832-83888 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAACAGUCCCUCUUUUCCUGACUGCCUACUUGAGGUUUGAGCUCGUGGCUACUCAUUUCUCUUGGUAGCCAGCAGCCAAACCUUUAGUAGUAAGUCAGAAUGGCAACAAAGAGGACA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAACAGUCCCUCUUUUC--| GC U A CG CAUU
CUGACU CUACU GAGGUUUG GCU UGGCUACU U
GACUGA GAUGA UUCCAAAC CGA ACCGAUGG C
ACAGGAGAAACAACGGUAA^ AU U - CG UUCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Novel-10-P3_5p |
mirBase accession | None |
Sequence |
0- UGAGGUUUGAGCUCGUGGCUACU -23
Get sequence
|
Star sequence |
Sha-Novel-10-P3_3p* |
mirBase accession | None |
Sequence |
35- UAGCCAGCAGCCAAACCUUUAG -57
Get sequence
|