MirGeneDB 3.0

MirGeneDB ID

Sha-Novel-10-P3

Family name SHA-NOVEL-10 (all species)
Seed GAGGUUU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Novel-10-P1a-v1  Sha-Novel-10-P1a-v2  Sha-Novel-10-P1b-v1  Sha-Novel-10-P1b-v2  Sha-Novel-10-P2a-v1  Sha-Novel-10-P2a-v2  Sha-Novel-10-P2b-v1  Sha-Novel-10-P2b-v2  Sha-Novel-10-P4  Sha-Novel-10-P5-v1  Sha-Novel-10-P5-v2 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
GL867904.1: 83832-83888 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAACAGUCCCUCUUUUCCUGACUGCCUACUUGAGGUUUGAGCUCGUGGCUACUCAUUUCUCUUGGUAGCCAGCAGCCAAACCUUUAGUAGUAAGUCAGAAUGGCAACAAAGAGGACA
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Structure
        10          20        30        40        50        
AAACAGUCCCUCUUUUC--|     GC     U        A   CG        CAUU 
                   CUGACU  CUACU GAGGUUUG GCU  UGGCUACU    U
                   GACUGA  GAUGA UUCCAAAC CGA  ACCGAUGG    C
ACAGGAGAAACAACGGUAA^     AU     U        -   CG        UUCU 
     110       100        90        80         70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Mature sequence

Sha-Novel-10-P3_5p

mirBase accessionNone
Sequence
0- UGAGGUUUGAGCUCGUGGCUACU -23
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Star sequence

Sha-Novel-10-P3_3p*

mirBase accessionNone
Sequence
35- UAGCCAGCAGCCAAACCUUUAG -57
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