| MirGeneDB ID | Sha-Novel-10-P4 |
|---|
| Family name |
SHA-NOVEL-10 (all species) |
|---|
| Seed |
GAGGUUU |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Novel-10-P1a-v1
Sha-Novel-10-P1a-v2
Sha-Novel-10-P1b-v1
Sha-Novel-10-P1b-v2
Sha-Novel-10-P2a-v1
Sha-Novel-10-P2a-v2
Sha-Novel-10-P2b-v1
Sha-Novel-10-P2b-v2
Sha-Novel-10-P3
Sha-Novel-10-P5-v1
Sha-Novel-10-P5-v2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. harrisii
|
|---|
| Node of Origin (family) |
S. harrisii
|
|---|
Genome context
(DEVIL_add) |
GL867904.1: 84439-84494 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUACAGUCCCUCUUUUCCUGACUGCCUACUUGAGGUUUGAGCUCGUGGCUACCCAUUUCUCUUGGUAGUCAGCAGCCAAACCUCAGUAGUAAGUCAGAAUGGCAACAAAGAGAACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUACAGUCCCUCUUUUC--| GC U A CG CAUU
CUGACU CUACU GAGGUUUG GCU UGGCUACC U
GACUGA GAUGA CUCCAAAC CGA ACUGAUGG C
ACAAGAGAAACAACGGUAA^ AU - - CG UUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Novel-10-P4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGGUUUGAGCUCGUGGCUACC -23
Get sequence
|
|---|
| Co-mature sequence |
Sha-Novel-10-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UAGUCAGCAGCCAAACCUCAG -56
Get sequence
|
|---|
