| MirGeneDB ID | Sha-Novel-10-P5-v1 |
|---|---|
| Family name | SHA-NOVEL-10 (all species) |
| Seed | GAGGUUU |
| Species | Tasmanian devil (Sarcophilus harrisii) |
| MiRBase ID | |
| Paralogues | Sha-Novel-10-P1a-v1 Sha-Novel-10-P1a-v2 Sha-Novel-10-P1b-v1 Sha-Novel-10-P1b-v2 Sha-Novel-10-P2a-v1 Sha-Novel-10-P2a-v2 Sha-Novel-10-P2b-v1 Sha-Novel-10-P2b-v2 Sha-Novel-10-P3 Sha-Novel-10-P4 Sha-Novel-10-P5-v2 |
| Orthologues | |
| Node of Origin (locus) | S. harrisii |
| Node of Origin (family) | S. harrisii |
| Genome context (DEVIL_add) |
GL867904.1: 85513-85568 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAACAGUCCCUCUUUUCCUGACUGCCUACUUGAGGUUUGAGCUACUGGCUACCCAUUUCGCUUGGUAUCCAGCAGCCAAACCUCAGUAGUGAGUCGGAAUGGCAACAAAGAGGACAGet precursor sequence |
| Structure | 10 20 30 40 50 GAACAGUCCCUCUUUUC--| GC U A A C CAUU CUGACU CUACU GAGGUUUG GCU CUGG UACC U GGCUGA GAUGA CUCCAAAC CGA GACC AUGG C ACAGGAGAAACAACGGUAA^ GU - - C U UUCG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Sha-Novel-10-P5-v1_5p |
| mirBase accession | None |
| Sequence |
0- UGAGGUUUGAGCUACUGGCUACC -23
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|
| Star sequence | Sha-Novel-10-P5-v1_3p* |
| mirBase accession | None |
| Sequence |
35- UAUCCAGCAGCCAAACCUCAG -56
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|
