| MirGeneDB ID | Sha-Novel-10-P5-v1 |
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| Family name |
SHA-NOVEL-10 (all species) |
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| Seed |
GAGGUUU |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
Sha-Novel-10-P1a-v1
Sha-Novel-10-P1a-v2
Sha-Novel-10-P1b-v1
Sha-Novel-10-P1b-v2
Sha-Novel-10-P2a-v1
Sha-Novel-10-P2a-v2
Sha-Novel-10-P2b-v1
Sha-Novel-10-P2b-v2
Sha-Novel-10-P3
Sha-Novel-10-P4
Sha-Novel-10-P5-v2
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL867904.1: 85513-85568 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAACAGUCCCUCUUUUCCUGACUGCCUACUUGAGGUUUGAGCUACUGGCUACCCAUUUCGCUUGGUAUCCAGCAGCCAAACCUCAGUAGUGAGUCGGAAUGGCAACAAAGAGGACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAACAGUCCCUCUUUUC--| GC U A A C CAUU
CUGACU CUACU GAGGUUUG GCU CUGG UACC U
GGCUGA GAUGA CUCCAAAC CGA GACC AUGG C
ACAGGAGAAACAACGGUAA^ GU - - C U UUCG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-10-P5-v1_5p |
| mirBase accession | None |
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| Sequence |
0- UGAGGUUUGAGCUACUGGCUACC -23
Get sequence
|
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| Star sequence |
Sha-Novel-10-P5-v1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- UAUCCAGCAGCCAAACCUCAG -56
Get sequence
|
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