Let-7-P19a

MirGeneDB ID

Sme-Let-7-P19a

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-let-7a

Paralogues

Sme-Let-7-P19b Sme-Let-7-P20a Sme-Let-7-P20b Sme-Let-7-P21 Sme-Let-7-P22

Orthologues

Aae-Let-7 Bge-Let-7 Bpl-Let-7 Cgi-Let-7 Cte-Let-7 Dan-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dsi-Let-7 Dya-Let-7 Esc-Let-7 Hme-Let-7 Isc-Let-7 Lan-Let-7 Lgi-Let-7 Npo-Let-7 Obi-Let-7 Ovu-Let-7 Pfl-Let-7 Pmi-Let-7 Sko-Let-7 Spu-Let-7 Tca-Let-7 Xbo-Let-7

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000140_dd_Smes_g4_140: 182795-182861 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAUUUUAUUUUUUGAAGCUAUCAAAUUCAUGAGGUAGAAUGUUGGAUGACUAAGGUAAAGGUAACAUAUCAGAGCUGUUCAAUUUUCUGCCUUUAAAAUUUGAUUAUUUAUCUUCAUAAAUUUCAA

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Structure

        10        20          30        40        50        60   
AAAUUUUAUUUUUUGAAGCU--|       CAU         U       GA  AAGGUAAAGG 
                      AUCAAAUU   GAGGUAGAA GUUGGAU  CU          \
                      UAGUUUAA   UUCCGUCUU UAACUUG  GA          U
AACUUUAAAUACUUCUAUUUAU^       AAU         U       UC  GACUAUACAA 
     120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Let-7-P19a_5p

mirBase accession

MIMAT0003952

Sequence

0- UGAGGUAGAAUGUUGGAUGACU -22

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Star sequence

Sme-Let-7-P19a_3p*

mirBase accession

MIMAT0012087

Sequence

45- CUGUUCAAUUUUCUGCCUUUAA -67

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