MirGeneDB ID | Sme-Let-7-P20a |
Family name |
LET-7 (all species) |
Seed |
GAGGUAG |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-let-7b
|
Paralogues |
Sme-Let-7-P19a
Sme-Let-7-P19b
Sme-Let-7-P20b
Sme-Let-7-P21
Sme-Let-7-P22
|
Orthologues |
Aae-Let-7
Aga-Let-7
Agr-Let-7
Bge-Let-7
Bko-Let-7
Bpl-Let-7
Cte-Let-7
Dan-Let-7
Dlo-Let-7
Dma-Let-7
Dme-Let-7
Dmo-Let-7
Dpu-Let-7
Dsi-Let-7
Dya-Let-7
Eba-Let-7
Egr-Let-7
Esc-Let-7
Gpa-Let-7
Gsa-Let-7
Gsp-Let-7
Hme-Let-7
Hmi-Let-7
Hru-Let-7
Isc-Let-7
Lan-Let-7
Lgi-Let-7
Lhy-Let-7
Llo-Let-7
Mgi-Let-7
Mom-Let-7
Npo-Let-7
Obi-Let-7
Ofu-Let-7
Ovu-Let-7
Pau-Let-7
Pca-Let-7
Pcr-Let-7
Pdu-Let-7
Pfl-Let-7
Ple-Let-7
Pmi-Let-7
Pve-Let-7
Rph-Let-7
Sko-Let-7
Sma-Let-7
Sne-Let-7
Snu-Let-7
Spu-Let-7
Sro-Let-7
Tca-Let-7
Tur-Let-7
War-Let-7
Xbo-Let-7
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Bilateria
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000450_dd_Smes_g4_450: 57961-58016 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UACGGGAAUCCGUUAAGUAACAUUAACAAUUGAGGUAGAUUGUUGGAUGACUUAAUUUUAAAGCCAUUCAACUAUCUGUCUUCUCUUGUUAAAUUACAUAUCAUCAUCAAGAAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UACGGGAAUCCGUUAAGUAACA-- UU -| U A UAAU
UUAACAA GAGG UAGAU GUUGGAUG CU \
AAUUGUU CUUC GUCUA CAACUUAC GA U
AGGAAGAACUACUACUAUACAUUA CU U^ U C AAUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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Mature sequence |
Sme-Let-7-P20a_5p |
mirBase accession | MIMAT0003953 |
Sequence |
0- UGAGGUAGAUUGUUGGAUGACU -22
Get sequence
|
Star sequence |
Sme-Let-7-P20a_3p* |
mirBase accession | MIMAT0003954 |
Sequence |
33- CCAUUCAACUAUCUGUCUUCUCU -56
Get sequence
|