MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-36-P20

Family name MIR-36 (all species)
Seed CACCGGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-36c
Paralogues Sme-Mir-36-P21  Sme-Mir-36-P22 
Orthologues Bge-Mir-36  Cbr-Mir-36-o20  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000019_dd_Smes_g4_19: 7234307-7234370 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P20)		 Mir-36-P20 NNSW01000019_dd_Smes_g4_19: 7234307-7234370 [+] UCSC Ensembl
Mir-36-P21 NNSW01000019_dd_Smes_g4_19: 7234834-7234895 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAGAAUUUUGAAUUUCAACAUAAAUUAGCGAUGAUUGUCCAACUGGUUUGGUGUCGAGUUGAAAAAUGCAUCACCGGGUAGACAUUCAUUCUCUAAAUUUAUCGUCAAUCUCCUUUUAUAUUG
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Structure
        10        20          30         40         50        60
UAAGAAUUUUGAAUUUCA  -     -    C -    U    CAA     U-| GUGUCGAG 
                  AC AUAAA UUAG G AUGA UGUC   CUGGU  UG        U
                  UG UAUUU AAUC C UACU ACAG   GGCCA  AC        U
GUUAUAUUUUCCUCUAAC  C     A    U U    U    AUG     CU^ GUAAAAAG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Star sequence

Sme-Mir-36-P20_5p*
mirBase accessionMIMAT0012158
Sequence 
0- GAUGAUUGUCCAACUGGUUUG -21
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Mature sequence

Sme-Mir-36-P20_3p
mirBase accessionMIMAT0011261
Sequence 
41- UCACCGGGUAGACAUUCAUUCUC -64
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