MirGeneDB ID | Sto-Mir-451 |
Family name |
MIR-451 (all species) |
Seed |
AACCGUU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-451
Ami-Mir-451
Bta-Mir-451
Cfa-Mir-451
Cja-Mir-451
Cli-Mir-451
Cmi-Mir-451
Cpi-Mir-451
Cpo-Mir-451
Dno-Mir-451
Dre-Mir-451
Ebu-Mir-451
Eca-Mir-451
Ete-Mir-451
Gga-Mir-451
Gja-Mir-451
Gmo-Mir-451
Hsa-Mir-451
Laf-Mir-451
Lch-Mir-451
Loc-Mir-451
Mal-Mir-451
Mdo-Mir-451
Mml-Mir-451
Mmr-Mir-451
Mmu-Mir-451
Mun-Mir-451
Neu-Mir-451
Oan-Mir-451
Ocu-Mir-451
Pab-Mir-451
Pma-Mir-451
Rno-Mir-451
Sha-Mir-451
Spt-Mir-451
Tgu-Mir-451
Tni-Mir-451
Xla-Mir-451-P1
Xla-Mir-451-P2
Xtr-Mir-451
|
Node of Origin (locus) |
Vertebrata
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Node of Origin (family) |
Vertebrata
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Genome context (GCA_003427355_STO_add) |
BFAA01023372.1: 9289-9330 [+]
|
Precursor (pre-Mir +30nt flank) |
GACCAUUGGACUCUCAAGGGAGUGUCGGUUAAACCGUUACCAUUACUUGUUUAAGUACUGGUAAGGGUUAUACUGCUGCUCCCAAACUCAUCUCAGCAGCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GACCAUUGGACUCUCAA--| U UA G U G
GGGAGUG CGGU AACC UUACCA UACUU U
CCCUCGU GUCA UUGG AAUGGU AUGAA U
ACCGACGACUCUACUCAAA^ C UA G C U
100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary. |
3' NTU |
NA
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Sto-Mir-451_5p |
mirBase accession | None |
Sequence |
0- AAACCGUUACCAUUACUUGUU -21
Get sequence
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