Mir-451

MirGeneDB ID

Rno-Mir-451

Family name

MIR-451 (all species)

Seed

AACCGUU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-451

Paralogues

Orthologues

Aca-Mir-451 Ami-Mir-451 Bta-Mir-451 Cfa-Mir-451 Cja-Mir-451 Cli-Mir-451 Cmi-Mir-451 Cpi-Mir-451 Cpo-Mir-451 Dno-Mir-451 Dre-Mir-451 Ebu-Mir-451 Eca-Mir-451 Ete-Mir-451 Gga-Mir-451 Gja-Mir-451 Gmo-Mir-451 Hsa-Mir-451 Laf-Mir-451 Lch-Mir-451 Loc-Mir-451 Mal-Mir-451 Mdo-Mir-451 Mml-Mir-451 Mmr-Mir-451 Mmu-Mir-451 Mun-Mir-451 Neu-Mir-451 Oan-Mir-451 Ocu-Mir-451 Pab-Mir-451 Pma-Mir-451 Sha-Mir-451 Spt-Mir-451 Sto-Mir-451 Tgu-Mir-451 Tni-Mir-451 Xla-Mir-451-P1 Xla-Mir-451-P2 Xtr-Mir-451

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr10: 65291218-65291259 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-451)

Mir-451 chr10: 65291218-65291259 [-] UCSC Ensembl
Mir-144-v1 chr10: 65291378-65291435 [-] UCSC Ensembl
Mir-144-v2 chr10: 65291378-65291435 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGACAGCUGUGGCAUUUGGGAAUGGCGAGGAAACCGUUACCAUUACUGAGUUUAGUAAUGGUAAUGGUUCUCUUGCUGCUCCCACAAACUAUGCCAAGAAGA

Get precursor sequence

Structure

        10          20        30        40        50
CGACAGCUGUGGCAUUU--|   AU      GA                 A 
                   GGGA  GGCGAG  AACCGUUACCAUUACUG G
                   CCCU  UCGUUC  UUGGUAAUGGUAAUGAU U
AGAAGAACCGUAUCAAACA^   CG      UC                 U 
100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

As a non-canonical (Group 4, Kim et al. 2016) miRNA there is no discrete 3p read and the 3' end of the mature miRNA is somewhat arbitrary.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-451_5p

mirBase accession

MIMAT0001633

Sequence

0- AAACCGUUACCAUUACUGAGUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0001633
TargetScanVert: rno-miR-451-5p
miRDB: MIMAT0001633