Mir-144-v1

MirGeneDB ID

Rno-Mir-144-v1

Family name

MIR-144 (all species)

Seed

GAUAUCA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-144

Paralogues

Rno-Mir-144-v2

Orthologues

Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cja-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Eca-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Pma-Mir-144 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tni-Mir-144 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr10: 65291378-65291435 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-144-v1)

Mir-451 chr10: 65291218-65291259 [-] UCSC Ensembl
Mir-144-v1 chr10: 65291378-65291435 [-] UCSC Ensembl
Mir-144-v2 chr10: 65291378-65291435 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGCUCCUCCUCCUCCAGGGCCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCAAGACUAGAGCCUGCCU

Get precursor sequence

Structure

        10        20          30        40        50         
GCUGCUCCUCCUCCUCCA   --|  U      G        A         AGUUUGUG 
                  GGG  CCU GGCUGG AUAUCAUC UAUACUGUA        \
                  CCC  GGG CUGAUC UGUAGUAG AUAUGACAU        A
UCCGUCCGAGAUCAGAAC   AU^  U      A        -         CACAGAGU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-144-v1_5p

mirBase accession

MIMAT0017130

Sequence

0- GGAUAUCAUCAUAUACUGUAAG -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-144-5p
miRDB: MIMAT0017130

Co-mature sequence

Rno-Mir-144-v1_3p

mirBase accession

MIMAT0000850

Sequence

37- UACAGUAUAGAUGAUGUACUA -58

Get sequence

Proposed targets

microrna.org: MIMAT0000850
TargetScanVert: rno-miR-144-3p
miRDB: MIMAT0000850