MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-144-v1

Family name MIR-144 (all species)
Seed GAUAUCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-144
Paralogues Aca-Mir-144-v2 
Orthologues Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cja-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Dre-Mir-144-v1  Ebu-Mir-144-v1  Eca-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mun-Mir-144-v1  Neu-Mir-144-v1  Oan-Mir-144  Ocu-Mir-144-v1  Pab-Mir-144-v1  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 G889P68288RO14: 342-398 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v1)		 Mir-451 G889P68288RO14: 156-197 [-] UCSC Ensembl
Mir-144-v1 G889P68288RO14: 342-398 [-] UCSC Ensembl
Mir-144-v2 G889P68288RO14: 342-398 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCCGGAUUCUGCCCGAAGUCUCUGGGCCGGAUAUCAUCAUAUACUGUAAGUUGGAAUGAGACACUACAGUAUAGAUGAUGUACUACCUUGAGCUCUUUCUUCCCGACUCGGGAUC
Get precursor sequence
Structure
        10         20         30         40        50        
CAUCCGGAUUCUGCCCG-   U-|  U   CC  -        A         AGUUGGA 
                  AAG  CUC GGG  GG AUAUCAUC UAUACUGUA       A
                  UUC  GAG UCC  UC UGUAGUAG AUAUGACAU       U
CUAGGGCUCAGCCCUUCU   UC^  U   A-  A        -         CACAGAG 
     110       100        90         80         70        60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsNo
Tissue expression
-   +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-144-v1_5p
mirBase accessionMIMAT0021771
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
Get sequence
Co-mature sequence

Aca-Mir-144-v1_3p
mirBase accessionMIMAT0021772
Sequence 
36- UACAGUAUAGAUGAUGUACUA -57
Get sequence