MirGeneDB 2.1
MirGeneDB ID

Mmu-Mir-144-v1

Family name MIR-144 (all species)
Seed GAUAUCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-144
Paralogues Mmu-Mir-144-v2 
Orthologues Aca-Mir-144-v1  Ami-Mir-144  Bta-Mir-144-v1  Cfa-Mir-144-v1  Cli-Mir-144-v1  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Dno-Mir-144  Dre-Mir-144-v1  Ebu-Mir-144-v1  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gmo-Mir-144-v1  Hsa-Mir-144-v1  Lch-Mir-144  Loc-Mir-144-v1  Mal-Mir-144-v1  Mdo-Mir-144  Mml-Mir-144  Mun-Mir-144-v1  Oan-Mir-144  Ocu-Mir-144-v1  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr11: 78073010-78073067 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v1)		 Mir-144-v1 chr11: 78073010-78073067 [+] UCSC Ensembl
Mir-144-v2 chr11: 78073010-78073067 [+] UCSC Ensembl
Mir-451 chr11: 78073186-78073227 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUCACCUCCUCCUCCAGGACCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCACCUCCAGAGCCUGCCU
Get precursor sequence
Structure
        10         20         30        40        50         
UGCUCACCUCCUCCUCCA-  -|   U      G        A         AGUUUGUG 
                   GG ACCU GGCUGG AUAUCAUC UAUACUGUA        \
                   CC UGGG CUGAUC UGUAGUAG AUAUGACAU        A
UCCGUCCGAGACCUCCACC  A^   U      A        -         CACAGAGU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Mmu-Mir-144-v1_5p
mirBase accessionMIMAT0016988
Sequence 
0- GGAUAUCAUCAUAUACUGUAAG -22
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Proposed targets TargetScanVert: mmu-miR-144-5p
miRDB: MIMAT0016988
Co-mature sequence

Mmu-Mir-144-v1_3p
mirBase accessionMIMAT0000156
Sequence 
37- UACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000156
TargetScanVert: mmu-miR-144-3p
miRDB: MIMAT0000156