MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-144

Family name MIR-144 (all species)
Seed ACAGUAU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pbv-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046106.1: 1186823-1186882 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144)
Mir-451 NC_046106.1: 1186079-1186120 [-] UCSC Ensembl
Mir-144 NC_046106.1: 1186823-1186882 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCGGGAUUUCUCGACUAGCACGUCUGUGCAGGAUAUCAUACUAUACUGUAAAUCAAUGCUGAACCAUUACAGUAUAUAUGAUGUGCUGCGGAGGGCUAUGUCCUUGUCUGCAUCUGCGU
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Structure
        10             20        30        40        50          
AGCGGGAUUUCUCGACU-----|  ACG   G     G        C          AUCAAUG 
                      AGC   UCU UGCAG AUAUCAUA UAUACUGUAA       \
                      UCG   GGA GCGUC UGUAGUAU AUAUGACAUU       C
UGCGUCUACGUCUGUUCCUGUA^  ---   G     G        -          ACCAAGU 
.       110       100           90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-144_5p*

mirBase accessionMIMAT0019474
Sequence
0- AGGAUAUCAUACUAUACUGUAAA -23
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Mature sequence

Pma-Mir-144_3p

mirBase accessionMIMAT0019475
Sequence
38- UACAGUAUAUAUGAUGUGCUGC -60
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