MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-144-v2

Family name MIR-144 (all species)
Seed GAUAUCA
Species Horse (Equus caballus)
MiRBase ID eca-mir-144
Paralogues Eca-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 CM009158.1: 43071876-43071917 [-] UCSC Ensembl
Mir-144-v1 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Mir-144-v2 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCCUGAGCCCCCUGCAGGUCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUACCCCCAGCUCUGGAGCCUGAU
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Structure
        10         20         30        40        50         
CUCCCUGAGCCCCCUGCA-   -|  U      G        A         A  UUGCG 
                   GGU CCC GGCUGG AUAUCAUC UAUACUGUA GU     A
                   CCA GGG CUGAUC UGUAGUAG AUAUGACAU CA     U
UAGUCCGAGGUCUCGACCC   U^  C      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-144-v2_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Eca-Mir-144-v2_3p*
mirBase accessionMIMAT0013024
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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