Mir-144-v2

MirGeneDB ID

Neu-Mir-144-v2

Family name

MIR-144 (all species)

Seed

AUAUCAU

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-144-v1

Orthologues

Aca-Mir-144-v2 Ami-Mir-144 Bta-Mir-144-v2 Cfa-Mir-144-v2 Cja-Mir-144-v2 Cli-Mir-144-v2 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v2 Dno-Mir-144 Dre-Mir-144-v2 Ebu-Mir-144-v2 Eca-Mir-144-v2 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v2 Gmo-Mir-144-v2 Hsa-Mir-144-v2 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v2 Mal-Mir-144-v2 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v2 Mun-Mir-144-v2 Oan-Mir-144 Ocu-Mir-144-v2 Pab-Mir-144-v2 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v2 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v2 Tni-Mir-144 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051814.1: 36247797-36247852 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGGCCAUGCCCACAUGGUGCCCUGGCCAGGAUAUCAUCGUAUACUGUAAGUUUGCAAUGAGACACUACAGUAUAGAUGAUGUACUGGUAUGGGUCACCCUCAGCUCUGUAACCCA

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Structure

        10         20         30        40        50        
AUGGCCAUGCCCACAUG-   -|  UG     G        G         A  UUGCA 
                  GUG CCC  GCCAG AUAUCAUC UAUACUGUA GU     A
                  CAC GGG  UGGUC UGUAGUAG AUAUGACAU CA     U
ACCCAAUGUCUCGACUCC   U^  UA     A        -         -  CAGAG 
    110       100        90        80         70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-144-v2_5p

mirBase accession

None

Sequence

0- GAUAUCAUCGUAUACUGUAAGU -22

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Star sequence

Neu-Mir-144-v2_3p*

mirBase accession

None

Sequence

36- UACAGUAUAGAUGAUGUACU -56

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