MirGeneDB ID | Pab-Mir-144-v2 |
Family name |
MIR-144 (all species) |
Seed |
GAUAUCA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-144-v1
|
Orthologues |
Aca-Mir-144-v2
Ami-Mir-144
Bta-Mir-144-v2
Cfa-Mir-144-v2
Cja-Mir-144-v2
Cli-Mir-144-v2
Cmi-Mir-144
Cpi-Mir-144
Cpo-Mir-144-v2
Dno-Mir-144
Dre-Mir-144-v2
Ebu-Mir-144-v2
Eca-Mir-144-v2
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v2
Gmo-Mir-144-v2
Hsa-Mir-144-v2
Laf-Mir-144
Lch-Mir-144
Loc-Mir-144-v2
Mal-Mir-144-v2
Mdo-Mir-144
Mml-Mir-144
Mmr-Mir-144
Mmu-Mir-144-v2
Mun-Mir-144-v2
Neu-Mir-144-v2
Oan-Mir-144
Ocu-Mir-144-v2
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v2
Sha-Mir-144
Spt-Mir-144
Sto-Mir-144
Tgu-Mir-144-v2
Tni-Mir-144
Xtr-Mir-144
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 42959687-42959744 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCCUGUGCCCCCAGUGGGGCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGCACCCCCAGCUCUGGAGCCUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCCUGUGCCCCCAGU- -| U G A A UUGCG
GGG GCCC GGCUGG AUAUCAUC UAUACUGUA GU A
CCC CGGG CUGAUC UGUAGUAG AUAUGACAU CA U
CAGUCCGAGGUCUCGACC A^ U A - - CAGAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-144-v2_5p |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
|
Star sequence |
Pab-Mir-144-v2_3p* |
mirBase accession | None |
Sequence |
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence
|