MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-144-v2

Family name MIR-144 (all species)
Seed UACAGUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-144
Paralogues Dre-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr5: 42272092-42272150 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 chr5: 42271979-42272020 [-] UCSC Ensembl
Mir-144-v1 chr5: 42272092-42272150 [-] UCSC Ensembl
Mir-144-v2 chr5: 42272092-42272150 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGAUUGUUUUAAUCUUGCUCUCUAGACAGGAUAUCAUCGUAUACUGUAAGUUCAUUAUUGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGGGUCAACGAGCCUCUGACGGUUU
Get precursor sequence
Structure
        10          20        30        40        50          
CUUGAUUGUUUUAAUCUU--|      A  C  G        G         A  UCAUUA 
                    GCUCUCU GA AG AUAUCAUC UAUACUGUA GU      \
                    UGGGGGA CU UC UGUAGUAG AUAUGACAU CA      U
UUUGGCAGUCUCCGAGCAAC^      C  A  A        -         -  CAGAGU 
       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-144-v2_5p*
mirBase accessionMIMAT0031975
Sequence 
0- GGAUAUCAUCGUAUACUGUAAGU -23
Get sequence
Mature sequence

Dre-Mir-144-v2_3p
mirBase accessionMIMAT0001841
Sequence 
37- CUACAGUAUAGAUGAUGUACUA -59
Get sequence
Proposed targets TargetScanFish: dre-miR-144