MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-144

Family name MIR-144 (all species)
Seed GAUAUCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mml-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 506777503-506777560 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144)
Mir-451 2: 506777386-506777427 [-] UCSC Ensembl
Mir-144 2: 506777503-506777560 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACGUGGAUGUGGCGCGGGGCCCAGGCCGGGAUAUCAUCGUAUACUGUAAGUUUGCAAUGAGACACUACAGUAUAGAUGAUGUACUGGCGAGGGCCGCCUCAGCUCCAGAGCCCAGC
Get precursor sequence
Structure
        10          20        30        40        50         
GGACGUGGAUGUGGCGC-  -|    AG     G        G         A  UUGCA 
                  GG GGCCC  GCCGG AUAUCAUC UAUACUGUA GU     A
                  CC CCGGG  CGGUC UGUAGUAG AUAUGACAU CA     U
CGACCCGAGACCUCGACU  G^    AG     A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms that corresponds to the isomirs in other taxa where the 3p arm is highly expressed.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-144_5p

mirBase accessionMIMAT0026669
Sequence
0- GGAUAUCAUCGUAUACUGUAAGU -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-144-5p
Star sequence

Mdo-Mir-144_3p*

mirBase accessionMIMAT0004114
Sequence
36- CUACAGUAUAGAUGAUGUACUG -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-144-3p