MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-144-v2

Family name MIR-144 (all species)
Seed UACAGUA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-144
Paralogues Gmo-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig314418: 343-401 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-144-v1 contig314418: 343-401 [+] UCSC Ensembl
Mir-144-v2 contig314418: 343-401 [+] UCSC Ensembl
Mir-451 contig314418: 488-531 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGUAGCCGUUGGUCUUGAGCCCUGGACAGGAUAUCAUCAUAUACUGUAAGUUCAUUAUGGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGUAUCAUUCUCCGUCAGAGGCCCU
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Structure
        10         20         30        40        50          
ACGGUAGCCGUUGGUCU-   -|       C  G        A         A  UCAUUA 
                  UGA GCCCUGGA AG AUAUCAUC UAUACUGUA GU      \
                  ACU UGGGACCU UC UGUAGUAG AUAUGACAU CA      U
UCCCGGAGACUGCCUCUU   A^       A  A        -         -  CAGAGG 
       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-144-v2_5p*
mirBase accessionMIMAT0044027
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Mature sequence

Gmo-Mir-144-v2_3p
mirBase accessionMIMAT0044028
Sequence 
37- CUACAGUAUAGAUGAUGUACUA -59
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