MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-144

Family name MIR-144 (all species)
Seed GAUAUCA
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cja-Mir-144-v1  Cja-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Eca-Mir-144-v1  Eca-Mir-144-v2  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Neu-Mir-144-v1  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pab-Mir-144-v1  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(echTel2)		 JH980319: 4842438-4842495 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGGGUGCUCUGGGUGGCAGGGCCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUAGCUCCAGCUCUGGAGGGGGGU
Get precursor sequence
Structure
        10        20          30        40        50         
UGGGUGCUCUGGGUGGCAGG--|   U      G        A         A  UUGCG 
                      GCCU GGCUGG AUAUCAUC UAUACUGUA GU     A
                      UGGG CUGAUC UGUAGUAG AUAUGACAU CA     U
UGGGGGGAGGUCUCGACCUCGA^   C      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
Go to detailed chart
CommentThere is a one nucleotide polymorphism in the 3p arm in the assembled sequence relative to the read data.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Ete-Mir-144_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
Co-mature sequence

Ete-Mir-144_3p
mirBase accessionNone
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence