MirGeneDB ID | Pab-Mir-144-v1 |
Family name |
MIR-144 (all species) |
Seed |
ACAGUAU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
Pab-Mir-144-v2
|
Orthologues |
Aca-Mir-144-v1
Ami-Mir-144
Bta-Mir-144-v1
Cfa-Mir-144-v1
Cja-Mir-144-v1
Cli-Mir-144-v1
Cmi-Mir-144
Cpi-Mir-144
Cpo-Mir-144-v1
Dno-Mir-144
Dre-Mir-144-v1
Ebu-Mir-144-v1
Eca-Mir-144-v1
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v1
Gmo-Mir-144-v1
Hsa-Mir-144-v1
Laf-Mir-144
Lch-Mir-144
Loc-Mir-144-v1
Mal-Mir-144-v1
Mdo-Mir-144
Mml-Mir-144
Mmr-Mir-144
Mmu-Mir-144-v1
Mun-Mir-144-v1
Neu-Mir-144-v1
Oan-Mir-144
Ocu-Mir-144-v1
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v1
Sha-Mir-144
Spt-Mir-144
Sto-Mir-144
Tgu-Mir-144-v1
Tni-Mir-144
Xtr-Mir-144
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054698.2: 42959687-42959744 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUCCUGUGCCCCCAGUGGGGCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGCACCCCCAGCUCUGGAGCCUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCCUGUGCCCCCAGU- -| U G A AGUUUGCG
GGG GCCC GGCUGG AUAUCAUC UAUACUGUA \
CCC CGGG CUGAUC UGUAGUAG AUAUGACAU A
CAGUCCGAGGUCUCGACC A^ U A - CACAGAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Pab-Mir-144-v1_5p* |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCAUAUACUGUAAG -22
Get sequence
|
Mature sequence |
Pab-Mir-144-v1_3p |
mirBase accession | None |
Sequence |
37- UACAGUAUAGAUGAUGUACUA -58
Get sequence
|