Mir-144-v1

MirGeneDB ID

Eca-Mir-144-v1

Family name

MIR-144 (all species)

Seed

ACAGUAU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-144

Paralogues

Eca-Mir-144-v2

Orthologues

Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cja-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v1 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tni-Mir-144 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009158.1: 43072038-43072095 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-144-v1)

Mir-451 CM009158.1: 43071876-43071917 [-] UCSC Ensembl
Mir-144-v1 CM009158.1: 43072038-43072095 [-] UCSC Ensembl
Mir-144-v2 CM009158.1: 43072038-43072095 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCCCUGAGCCCCCUGCAGGUCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUACCCCCAGCUCUGGAGCCUGAU

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Structure

        10         20         30        40        50         
CUCCCUGAGCCCCCUGCA-   -|  U      G        A         AGUUUGCG 
                   GGU CCC GGCUGG AUAUCAUC UAUACUGUA        \
                   CCA GGG CUGAUC UGUAGUAG AUAUGACAU        A
UAGUCCGAGGUCUCGACCC   U^  C      A        -         CACAGAGU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-144-v1_5p*

mirBase accession

None

Sequence

0- GGAUAUCAUCAUAUACUGUAAG -22

Get sequence

Mature sequence

Eca-Mir-144-v1_3p

mirBase accession

MIMAT0013024

Sequence

37- UACAGUAUAGAUGAUGUACUA -58

Get sequence