MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-144

Family name MIR-144 (all species)
Seed GAUAUCA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cja-Mir-144-v1  Cja-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Eca-Mir-144-v1  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Neu-Mir-144-v1  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pab-Mir-144-v1  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01023372.1: 8747-8805 [+]
Precursor
(pre-Mir +30nt flank)
AGAAUGAAGAGCUGCCUUUGGCUCUGGCUAGGAUAUCAUCAUAUACUGUAAGUUCACUAUUAAUGUACUACAGUAUAGAUGAUGUACUAUUCAGUGCUCGCUUACAUAACCAACACAAG
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Structure
        10          20        30        40        50          
AGAAUGAAGAGCUGCCUUU--|  U   GC   G        A         A  UCACUA 
                     GGC CUG  UAG AUAUCAUC UAUACUGUA GU      \
                     UCG GAC  AUC UGUAGUAG AUAUGACAU CA      U
GAACACAACCAAUACAUUCGC^  U   UU   A        -         -  UGUAAU 
       110       100        90        80         70
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms that corresponds to the isomirs in other taxa where the 3p arm is highly expressed.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Sto-Mir-144_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Sto-Mir-144_3p*
mirBase accessionNone
Sequence 
37- CUACAGUAUAGAUGAUGUACUA -59
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