MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-144-v2

Family name MIR-144 (all species)
Seed GAUAUCA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 100804311-100804368 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCCUGUGACCUCGAUGGGGCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGCACCCCCAGCUCUGGGGCCUGAC
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Structure
        10         20         30        40        50         
CUUCCUGUGACCUCGAU-   -|   U      G        A         A  UUGCG 
                  GGG GCCC GGCUGG AUAUCAUC UAUACUGUA GU     A
                  CCC CGGG CUGAUC UGUAGUAG AUAUGACAU CA     U
CAGUCCGGGGUCUCGACC   A^   U      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-144-v2_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Cja-Mir-144-v2_3p*
mirBase accessionNone
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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