MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-144-v2

Family name MIR-144 (all species)
Seed GAUAUCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-144
Paralogues Aca-Mir-144-v1 
Orthologues Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 G889P68288RO14: 342-398 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-451 G889P68288RO14: 156-197 [-] UCSC Ensembl
Mir-144-v1 G889P68288RO14: 342-398 [-] UCSC Ensembl
Mir-144-v2 G889P68288RO14: 342-398 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCCGGAUUCUGCCCGAAGUCUCUGGGCCGGAUAUCAUCAUAUACUGUAAGUUGGAAUGAGACACUACAGUAUAGAUGAUGUACUACCUUGAGCUCUUUCUUCCCGACUCGGGAUC
Get precursor sequence
Structure
        10         20         30         40        50         
CAUCCGGAUUCUGCCCG-   U-|  U   CC  -        A         A  UGGAA 
                  AAG  CUC GGG  GG AUAUCAUC UAUACUGUA GU     \
                  UUC  GAG UCC  UC UGUAGUAG AUAUGACAU CA     U
CUAGGGCUCAGCCCUUCU   UC^  U   A-  A        -         -  CAGAG 
     110       100        90         80         70         60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsNo
Tissue expression
-   +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-144-v2_5p
mirBase accessionMIMAT0021771
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
Co-mature sequence

Aca-Mir-144-v2_3p
mirBase accessionMIMAT0021772
Sequence 
35- CUACAGUAUAGAUGAUGUACUA -57
Get sequence