MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-144-v2

Family name MIR-144 (all species)
Seed UACAGUA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015173122.1: 2276609-2276665 [-]
Precursor
(pre-Mir +30nt flank)
AGCUAUUGAGACUUUCUAAGGCUCCAGGUUGGAUAUCAUCGUAUACUGUAAGUUGGAAUCAGACACUACAGUAUAGAUGAUGUACUACCUUGAACCUCUCAUCCAACUGACCUCCCG
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Structure
        10          20        30        40        50         
AGCUAUUGAGACUUUCUA--|  C  C    UGG        G         A  UGGAA 
                    AGG UC AGGU   AUAUCAUC UAUACUGUA GU     \
                    UCC AG UCCA   UGUAGUAG AUAUGACAU CA     U
GCCCUCCAGUCAACCUACUC^  A  U    UCA        -         -  CAGAC 
     110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-144-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGAUAUCAUCGUAUACUGUAAGU -23
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Mature sequence

Gja-Mir-144-v2_3p
mirBase accessionNone
Sequence 
35- CUACAGUAUAGAUGAUGUACUA -57
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