MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-144

Family name MIR-144 (all species)
Seed GAUAUCA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cja-Mir-144-v1  Cja-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Eca-Mir-144-v1  Eca-Mir-144-v2  Ete-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Neu-Mir-144-v1  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pab-Mir-144-v1  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 19: 6010840-6010897 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144)		 Mir-451 19: 6010684-6010725 [-] UCSC Ensembl
Mir-144 19: 6010840-6010897 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUCAGCACGCUGCCCGCCGCCCUGGGCUGGAUAUCAUCAUAUACUGUAAGUUCACUAUGAGACACUACAGUAUAGAUGAUGUACUCCCCUGGGCUGCACCCGACCCCGAGAGCUGC
Get precursor sequence
Structure
        10          20        30        40        50         
UGCUCAGCACGCUGCCC--| C    U   CUGG        A         A  UCACU 
                   GC GCCC GGG    AUAUCAUC UAUACUGUA GU     A
                   CG CGGG CCC    UGUAGUAG AUAUGACAU CA     U
CGUCGAGAGCCCCAGCCCA^ U    U   CUCA        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms that corresponds to the isomirs in other taxa where the 3p arm is highly expressed.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-144_5p
mirBase accessionMIMAT0026644
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
Get sequence
Proposed targets TargetScanVert: gga-miR-144-5p
miRDB: MIMAT0026644
Star sequence

Gga-Mir-144_3p*
mirBase accessionMIMAT0003776
Sequence 
36- CUACAGUAUAGAUGAUGUACUC -58
Get sequence
Proposed targets TargetScanVert: gga-miR-144-3p
miRDB: MIMAT0003776