MirGeneDB ID | Loc-Mir-144-v1 |
Family name |
MIR-144 (all species) |
Seed |
ACAGUAU |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-144-v2
|
Orthologues |
Aca-Mir-144-v1
Ami-Mir-144
Bta-Mir-144-v1
Cfa-Mir-144-v1
Cja-Mir-144-v1
Cli-Mir-144-v1
Cmi-Mir-144
Cpi-Mir-144
Cpo-Mir-144-v1
Dno-Mir-144
Dre-Mir-144-v1
Ebu-Mir-144-v1
Eca-Mir-144-v1
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v1
Gmo-Mir-144-v1
Hsa-Mir-144-v1
Laf-Mir-144
Lch-Mir-144
Mal-Mir-144-v1
Mdo-Mir-144
Mml-Mir-144
Mmr-Mir-144
Mmu-Mir-144-v1
Mun-Mir-144-v1
Neu-Mir-144-v1
Oan-Mir-144
Ocu-Mir-144-v1
Pab-Mir-144-v1
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v1
Sha-Mir-144
Spt-Mir-144
Sto-Mir-144
Tgu-Mir-144-v1
Tni-Mir-144
Xtr-Mir-144
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (LepOcu1) |
LG22: 3766309-3766367 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUUUUCUGAACAGGCUUGUACUCUGGACAGGAUAUCAUCAUAUACUGUAAGUUCGUUAUAGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGUUUCAUCCUCCUUCUGGACAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUUUUCUGAACAGGCU- U-| C G A AGUUCGUU
UG ACUCUGGA AG AUAUCAUC UAUACUGUA A
AC UGGGACCU UC UGUAGUAG AUAUGACAU U
UAAACAGGUCUUCCUCCU UU^ A A - CACAGAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-144-v1_5p* |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCAUAUACUGUAAG -22
Get sequence
|
Mature sequence |
Loc-Mir-144-v1_3p |
mirBase accession | None |
Sequence |
38- UACAGUAUAGAUGAUGUACUA -59
Get sequence
|