Mir-144

MirGeneDB ID

Pbv-Mir-144

Family name

MIR-144 (all species)

Seed

UACAGUA

Species

Burmese python (Python bivittatus)

MiRBase ID

pbv-mir-144

Paralogues

Orthologues

Aca-Mir-144-v1 Aca-Mir-144-v2 Ami-Mir-144 Bta-Mir-144-v1 Bta-Mir-144-v2 Cfa-Mir-144-v1 Cfa-Mir-144-v2 Cli-Mir-144-v1 Cli-Mir-144-v2 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Cpo-Mir-144-v2 Dno-Mir-144 Dre-Mir-144-v1 Dre-Mir-144-v2 Ebu-Mir-144-v1 Ebu-Mir-144-v2 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gja-Mir-144-v2 Gmo-Mir-144-v1 Gmo-Mir-144-v2 Hsa-Mir-144-v1 Hsa-Mir-144-v2 Lch-Mir-144 Loc-Mir-144-v1 Loc-Mir-144-v2 Mal-Mir-144-v1 Mal-Mir-144-v2 Mdo-Mir-144 Mml-Mir-144 Mmu-Mir-144-v1 Mmu-Mir-144-v2 Mun-Mir-144-v1 Mun-Mir-144-v2 Oan-Mir-144 Ocu-Mir-144-v1 Ocu-Mir-144-v2 Pma-Mir-144 Rno-Mir-144-v1 Rno-Mir-144-v2 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tgu-Mir-144-v2 Tni-Mir-144 Xla-Mir-144-P1-v1 Xla-Mir-144-P1-v2 Xla-Mir-144-P2-v1 Xla-Mir-144-P2-v2 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000186305.2_Python_molurus_bivittatus)

KE957536.1: 98855-98911 [-]

Precursor
(pre-Mir +30nt flank)

GAGCGGACAGACUUGCUGGGGCUCCAGCUCGGAUAUCAUCAUAUACUGUAAGUUGGAAUCAGACACUACAGUAUAGAUGAUGUACUAUCUGGAGCUCCUGGAUCCGUCGGAAGCCCG

Get precursor sequence

Structure

        10          20        30        40        50         
GAGCGGACAGACUUGCU--|         CUCGG        A         A  UGGAA 
                   GGGGCUCCAG     AUAUCAUC UAUACUGUA GU     \
                   CCUCGAGGUC     UGUAGUAG AUAUGACAU CA     U
GCCCGAAGGCUGCCUAGGU^         UAUCA        -         -  CAGAC 
     110       100        90        80         70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pbv-Mir-144_5p* (predicted)

mirBase accession

MIMAT0038957

Sequence

0- GGAUAUCAUCAUAUACUGUAAGU -23

Get sequence

Mature sequence

Pbv-Mir-144_3p

mirBase accession

MIMAT0038958

Sequence

35- CUACAGUAUAGAUGAUGUACUA -57

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