MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-144-v2

Family name MIR-144 (all species)
Seed GAUAUCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-144
Paralogues Tgu-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 19: 4217046-4217103 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-144-v1 19: 4217046-4217103 [+] UCSC Ensembl
Mir-144-v2 19: 4217046-4217103 [+] UCSC Ensembl
Mir-451 19: 4217241-4217282 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGCUCUCCUCUCCGCGCUGUCCCGGGCAGGAUAUCAUCGUAUACUGUAAGUUGGCUAUGAGACACUACAGUAUAGAUGAUGUACUCCCCGGGCUGCACCGACCUCCUCCCGCCGCA
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Structure
        10           20        30        40        50         
UCUGCUCUCCUCUCCGC---| U U      C  G        G         A  UGGCU 
                    GC G CCCGGG AG AUAUCAUC UAUACUGUA GU     A
                    CG C GGGCCC UC UGUAGUAG AUAUGACAU CA     U
ACGCCGCCCUCCUCCAGCCA^ U -      C  A        -         -  CAGAG 
      110       100         90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-144-v2_5p
mirBase accessionMIMAT0014650
Sequence 
0- GGAUAUCAUCGUAUACUGUAAGU -23
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Co-mature sequence

Tgu-Mir-144-v2_3p
mirBase accessionMIMAT0014596
Sequence 
36- CUACAGUAUAGAUGAUGUACUC -58
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