MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-144

Family name MIR-144 (all species)
Seed ACAGUAU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 7: 2925543-2925603 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCAGGCGCUGUGUCUUGUGCCCUGGACAGGAUAUCAUCUUAUACUGUAAGUUUAAUAAAGUGACACUACAGUAUAGAUGAUGUACUAUCCAGGGCUUCAUUCCUCCUCCGGCUCCAUC
Get precursor sequence
Structure
        10        20          30        40        50        60
CCACCAGGCGCUGUGUCUUGU--|       C  G         U        AGUUUAAU 
                       GCCCUGGA AG AUAUCAUCU AUACUGUA        A
                       CGGGACCU UC UGUAGUAGA UAUGACAU        A
CUACCUCGGCCUCCUCCUUACUU^       A  A         -        CACAGUGA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-144_5p*
mirBase accessionNone
Sequence 
0- AGGAUAUCAUCUUAUACUGUAAG -23
Get sequence
Mature sequence

Tni-Mir-144_3p
mirBase accessionMIMAT0003021
Sequence 
39- UACAGUAUAGAUGAUGUACUAU -61
Get sequence