MirGeneDB ID | Cja-Mir-144-v1 |
---|---|
Family name | MIR-144 (all species) |
Seed | GAUAUCA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-144-v2 |
Orthologues | Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Cpo-Mir-144-v1 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Eca-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v1 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tni-Mir-144 Xtr-Mir-144 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 100804311-100804368 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CUUCCUGUGACCUCGAUGGGGCCCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGCACCCCCAGCUCUGGGGCCUGACGet precursor sequence |
Structure | 10 20 30 40 50 CUUCCUGUGACCUCGAU- -| U G A AGUUUGCG GGG GCCC GGCUGG AUAUCAUC UAUACUGUA \ CCC CGGG CUGAUC UGUAGUAG AUAUGACAU A CAGUCCGGGGUCUCGACC A^ U A - CACAGAGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14) |
Mature sequence | Cja-Mir-144-v1_5p |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCAUAUACUGUAAG -22
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|
Co-mature sequence | Cja-Mir-144-v1_3p |
mirBase accession | None |
Sequence |
37- UACAGUAUAGAUGAUGUACUA -58
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|