Mir-144-v1

MirGeneDB ID

Cpo-Mir-144-v1

Family name

MIR-144 (all species)

Seed

ACAGUAU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-144

Paralogues

Cpo-Mir-144-v2

Orthologues

Aca-Mir-144-v1 Ami-Mir-144 Bta-Mir-144-v1 Cfa-Mir-144-v1 Cja-Mir-144-v1 Cli-Mir-144-v1 Cmi-Mir-144 Cpi-Mir-144 Dno-Mir-144 Dre-Mir-144-v1 Ebu-Mir-144-v1 Eca-Mir-144-v1 Ete-Mir-144 Gga-Mir-144 Gja-Mir-144-v1 Gmo-Mir-144-v1 Hsa-Mir-144-v1 Laf-Mir-144 Lch-Mir-144 Loc-Mir-144-v1 Mal-Mir-144-v1 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Mmu-Mir-144-v1 Mun-Mir-144-v1 Neu-Mir-144-v1 Oan-Mir-144 Ocu-Mir-144-v1 Pab-Mir-144-v1 Pbv-Mir-144 Pma-Mir-144 Rno-Mir-144-v1 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tgu-Mir-144-v1 Tni-Mir-144 Xtr-Mir-144

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_32: 23622352-23622409 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-144-v1)

Mir-144-v1 scaffold_32: 23622352-23622409 [+] UCSC
Mir-144-v2 scaffold_32: 23622352-23622409 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CCGAUUCCUGACCUCCUAGGGCUCUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCCGGGUACCCCCAGCUCUGGAGUCUGAU

Get precursor sequence

Structure

        10        20          30        40        50         
CCGAUUCCUGACCUCCUA   C-     -|   G        A         AGUUUGUG 
                  GGG  UCUGG CUGG AUAUCAUC UAUACUGUA        \
                  CCC  GGGCC GAUC UGUAGUAG AUAUGACAU        A
UAGUCUGAGGUCUCGACC   AU     U^   A        -         CACAGAGU 
      110       100        90        80         70        60