MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-144

Family name MIR-144 (all species)
Seed GAUAUCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cja-Mir-144-v1  Cja-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Eca-Mir-144-v1  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Neu-Mir-144-v1  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pab-Mir-144-v1  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr2: 26506546-26506603 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144)		 Mir-144 chr2: 26506546-26506603 [+] UCSC Ensembl
Mir-451 chr2: 26507261-26507302 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCACCCACGGCCUUUGGGACUGUGUUUGGGAUAUCAUCAUAUACUGUAAGUUUGUUUUAAGACACUACAGUAUAGAUGAUGUACUACACCAAGUCUCACAAGCACGCACUGUCCAC
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Structure
        10          20        30        40        50         
UUGCACCCACGGCCUUU--|     GU  U   G        A         A  UUGUU 
                   GGGACU  GU UGG AUAUCAUC UAUACUGUA GU     U
                   CUCUGA  CA AUC UGUAGUAG AUAUGACAU CA     U
CACCUGUCACGCACGAACA^     AC  C   A        -         -  CAGAA 
      110       100        90        80         70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms that corresponds to the isomirs in other taxa where the 3p arm is highly expressed.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-144_5p
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Star sequence

Xtr-Mir-144_3p*
mirBase accessionMIMAT0003687
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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Proposed targets TargetScanVert: xtr-miR-144