MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-144-v2

Family name MIR-144 (all species)
Seed GAUAUCA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-144
Paralogues Mmu-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v2  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr11: 78073010-78073067 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-v2)		 Mir-144-v1 chr11: 78073010-78073067 [+] UCSC Ensembl
Mir-144-v2 chr11: 78073010-78073067 [+] UCSC Ensembl
Mir-451 chr11: 78073186-78073227 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUCACCUCCUCCUCCAGGACCUUGGCUGGGAUAUCAUCAUAUACUGUAAGUUUGUGAUGAGACACUACAGUAUAGAUGAUGUACUAGUCUGGGUACCCCACCUCCAGAGCCUGCCU
Get precursor sequence
Structure
        10         20         30        40        50         
UGCUCACCUCCUCCUCCA-  -|   U      G        A         A  UUGUG 
                   GG ACCU GGCUGG AUAUCAUC UAUACUGUA GU     A
                   CC UGGG CUGAUC UGUAGUAG AUAUGACAU CA     U
UCCGUCCGAGACCUCCACC  A^   U      A        -         -  CAGAG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-144-v2_5p
mirBase accessionMIMAT0016988
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Proposed targets TargetScanVert: mmu-miR-144-5p
miRDB: MIMAT0016988
Star sequence

Mmu-Mir-144-v2_3p*
mirBase accessionMIMAT0000156
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence
Proposed targets microrna.org: MIMAT0000156
TargetScanVert: mmu-miR-144-3p
miRDB: MIMAT0000156