MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-144-v2

Family name MIR-144 (all species)
Seed UACAGUA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-144-v1 
Orthologues Aca-Mir-144-v2  Ami-Mir-144  Bta-Mir-144-v2  Cfa-Mir-144-v2  Cja-Mir-144-v2  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v2  Ebu-Mir-144-v2  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v2  Gmo-Mir-144-v2  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v2  Mun-Mir-144-v2  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v2  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v2  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG22: 3766309-3766367 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUUCUGAACAGGCUUGUACUCUGGACAGGAUAUCAUCAUAUACUGUAAGUUCGUUAUAGAGACACUACAGUAUAGAUGAUGUACUAUCCAGGGUUUCAUCCUCCUUCUGGACAAAU
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Structure
        10         20         30        40        50          
GAUUUUCUGAACAGGCU-  U-|       C  G        A         A  UCGUUA 
                  UG  ACUCUGGA AG AUAUCAUC UAUACUGUA GU      \
                  AC  UGGGACCU UC UGUAGUAG AUAUGACAU CA      U
UAAACAGGUCUUCCUCCU  UU^       A  A        -         -  CAGAGA 
       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-144-v2_5p*
mirBase accessionNone
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Mature sequence

Loc-Mir-144-v2_3p
mirBase accessionNone
Sequence 
37- CUACAGUAUAGAUGAUGUACUA -59
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