MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-144

Family name MIR-144 (all species)
Seed GAUAUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-144
Paralogues
Orthologues Aca-Mir-144-v1  Aca-Mir-144-v2  Bta-Mir-144-v1  Bta-Mir-144-v2  Cfa-Mir-144-v1  Cfa-Mir-144-v2  Cja-Mir-144-v1  Cja-Mir-144-v2  Cli-Mir-144-v1  Cli-Mir-144-v2  Cmi-Mir-144  Cpi-Mir-144  Cpo-Mir-144-v1  Cpo-Mir-144-v2  Dno-Mir-144  Dre-Mir-144-v1  Dre-Mir-144-v2  Ebu-Mir-144-v1  Ebu-Mir-144-v2  Eca-Mir-144-v1  Eca-Mir-144-v2  Ete-Mir-144  Gga-Mir-144  Gja-Mir-144-v1  Gja-Mir-144-v2  Gmo-Mir-144-v1  Gmo-Mir-144-v2  Hsa-Mir-144-v1  Hsa-Mir-144-v2  Laf-Mir-144  Lch-Mir-144  Loc-Mir-144-v1  Loc-Mir-144-v2  Mal-Mir-144-v1  Mal-Mir-144-v2  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Mmu-Mir-144-v1  Mmu-Mir-144-v2  Mun-Mir-144-v1  Mun-Mir-144-v2  Neu-Mir-144-v1  Neu-Mir-144-v2  Oan-Mir-144  Ocu-Mir-144-v1  Ocu-Mir-144-v2  Pab-Mir-144-v1  Pab-Mir-144-v2  Pbv-Mir-144  Pma-Mir-144  Rno-Mir-144-v1  Rno-Mir-144-v2  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tgu-Mir-144-v1  Tgu-Mir-144-v2  Tni-Mir-144  Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v1  Xla-Mir-144-P2-v2  Xtr-Mir-144 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711222.1: 62858-62915 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGCCCGGCGCGUGCGGGGGGCUCUGGGCAGGAUAUCAUCGUAUACUGUAAGUCGGCUAUGAGACACUACAGUAUAGAUGAUGUACUACCCCGGCCUUUCCCCUCCUCGGCGCCCAGC
Get precursor sequence
Structure
        10           20        30        40        50         
CAGCCCGGCGCGUGCGG---|     CU   C  G        G         A  CGGCU 
                    GGGGCU  GGG AG AUAUCAUC UAUACUGUA GU     A
                    UUCCGG  CCC UC UGUAGUAG AUAUGACAU CA     U
CGACCCGCGGCUCCUCCCCU^     C-   A  A        -         -  CAGAG 
      110       100         90        80         70         60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms that corresponds to the isomirs in other taxa where the 3p arm is highly expressed.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-144_5p
mirBase accessionMIMAT0038167
Sequence 
0- GGAUAUCAUCGUAUACUGUAAGU -23
Get sequence
Star sequence

Ami-Mir-144_3p*
mirBase accessionMIMAT0038168
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
Get sequence