MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-144-P2-v1

Family name MIR-144 (all species)
Seed GAUAUCA
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-144
Paralogues Xla-Mir-144-P1-v1  Xla-Mir-144-P1-v2  Xla-Mir-144-P2-v2 
Orthologues Ami-Mir-144  Cmi-Mir-144  Cpi-Mir-144  Dno-Mir-144  Ete-Mir-144  Gga-Mir-144  Laf-Mir-144  Lch-Mir-144  Mdo-Mir-144  Mml-Mir-144  Mmr-Mir-144  Oan-Mir-144  Pbv-Mir-144  Pma-Mir-144  Sha-Mir-144  Spt-Mir-144  Sto-Mir-144  Tni-Mir-144  Xtr-Mir-144 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-144-P2-v1)		 Mir-144-P2-v1 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl
Mir-144-P2-v2 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGUAGCCGAGGCCUUUGGGACUGAGUUUGGGAUAUCAUCAUAUACUGUAAGUUUGUUUUAAGACACUACAGUAUAGAUGAUGUACUACACCAAGUCUCACCAGCACCCACCGACCCA
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Structure
        10          20        30        40        50         
CGGUAGCCGAGGCCUUU--|     GA  U   G        A         A  UUGUU 
                   GGGACU  GU UGG AUAUCAUC UAUACUGUA GU     U
                   CUCUGA  CA AUC UGUAGUAG AUAUGACAU CA     U
ACCCAGCCACCCACGACCA^     AC  C   A        -         -  CAGAA 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-144-P2-v1_5p
mirBase accessionMIMAT0046458
Sequence 
0- GGAUAUCAUCAUAUACUGUAAGU -23
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Co-mature sequence

Xla-Mir-144-P2-v1_3p
mirBase accessionMIMAT0046459
Sequence 
36- CUACAGUAUAGAUGAUGUACUA -58
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