Mir-144-P2-v1

MirGeneDB ID

Xla-Mir-144-P2-v1

Family name

MIR-144 (all species)

Seed

GAUAUCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-144

Paralogues

Xla-Mir-144-P1-v1 Xla-Mir-144-P1-v2 Xla-Mir-144-P2-v2

Orthologues

Ami-Mir-144 Cmi-Mir-144 Cpi-Mir-144 Dno-Mir-144 Ete-Mir-144 Gga-Mir-144 Laf-Mir-144 Lch-Mir-144 Mdo-Mir-144 Mml-Mir-144 Mmr-Mir-144 Oan-Mir-144 Pbv-Mir-144 Pma-Mir-144 Sha-Mir-144 Spt-Mir-144 Sto-Mir-144 Tni-Mir-144 Xtr-Mir-144

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 4344085-4344142 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-144-P2-v1)

Mir-144-P2-v1 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl
Mir-144-P2-v2 NC_030727.1: 4344085-4344142 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGUAGCCGAGGCCUUUGGGACUGAGUUUGGGAUAUCAUCAUAUACUGUAAGUUUGUUUUAAGACACUACAGUAUAGAUGAUGUACUACACCAAGUCUCACCAGCACCCACCGACCCA

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Structure

        10          20        30        40        50         
CGGUAGCCGAGGCCUUU--|     GA  U   G        A         A  UUGUU 
                   GGGACU  GU UGG AUAUCAUC UAUACUGUA GU     U
                   CUCUGA  CA AUC UGUAGUAG AUAUGACAU CA     U
ACCCAGCCACCCACGACCA^     AC  C   A        -         -  CAGAA 
      110       100        90        80         70         60

Deep sequencing

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-144-P2-v1_5p

mirBase accession

MIMAT0046458

Sequence

0- GGAUAUCAUCAUAUACUGUAAGU -23

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Co-mature sequence

Xla-Mir-144-P2-v1_3p

mirBase accession

MIMAT0046459

Sequence

36- CUACAGUAUAGAUGAUGUACUA -58

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