MirGeneDB ID | Cli-Mir-144-v1 |
Family name |
MIR-144 (all species) |
Seed |
GAUAUCA |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
|
Paralogues |
Cli-Mir-144-v2
|
Orthologues |
Aca-Mir-144-v1
Ami-Mir-144
Bta-Mir-144-v1
Cfa-Mir-144-v1
Cja-Mir-144-v1
Cmi-Mir-144
Cpi-Mir-144
Cpo-Mir-144-v1
Dno-Mir-144
Dre-Mir-144-v1
Ebu-Mir-144-v1
Eca-Mir-144-v1
Ete-Mir-144
Gga-Mir-144
Gja-Mir-144-v1
Gmo-Mir-144-v1
Hsa-Mir-144-v1
Laf-Mir-144
Lch-Mir-144
Loc-Mir-144-v1
Mal-Mir-144-v1
Mdo-Mir-144
Mml-Mir-144
Mmr-Mir-144
Mmu-Mir-144-v1
Mun-Mir-144-v1
Neu-Mir-144-v1
Oan-Mir-144
Ocu-Mir-144-v1
Pab-Mir-144-v1
Pbv-Mir-144
Pma-Mir-144
Rno-Mir-144-v1
Sha-Mir-144
Spt-Mir-144
Sto-Mir-144
Tgu-Mir-144-v1
Tni-Mir-144
Xtr-Mir-144
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
SRR516967: 48-105 [+]
|
Precursor (pre-Mir +30nt flank) |
ACUCUGGGACGCUGCCCGCUCCCCUGGGCAGGAUAUCAUCGUAUACUGUAAGUCGGCUAUGAGACACUACAGUAUAGAUGAUGUACUCCCCGGGGCUGCACCCGCCGACCGGCCCGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACUCUGGGACGCUGCCC--| UC C G G AGUCGGCU
GC CCCUGGG AG AUAUCAUC UAUACUGUA \
CG GGGGCCC UC UGUAGUAG AUAUGACAU A
CGGCCCGGCCAGCCGCCCA^ UC C A - CACAGAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The pre appears to be incomplete and so the 3' end is derived from the 3p read. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cli-Mir-144-v1_5p |
mirBase accession | None |
Sequence |
0- GGAUAUCAUCGUAUACUGUAAG -22
Get sequence
|
Co-mature sequence |
Cli-Mir-144-v1_3p |
mirBase accession | None |
Sequence |
37- UACAGUAUAGAUGAUGUACUC -58
Get sequence
|